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A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability

The Texas-Louisiana shelf in the Northern Gulf of Mexico receives large inputs of nutrients and freshwater from the Mississippi/Atchafalaya River system. The nutrients stimulate high rates of primary production in the river plume, which contributes to the development of a large and recurring hypoxic area in summer, but the mechanistic links between hypoxia and river … Read more

Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline

Microsatellites are the markers of choice for a variety of population genetic studies. The recent advent of next-generation pyrosequencing has drastically accelerated microsatellite locus discovery by providing a greater amount of DNA sequencing reads at lower costs compared to other techniques. However, laboratory testing of PCR primers targeting potential microsatellite markers remains time consuming and … Read more

Pathways between primary production and fisheries yields of large marine ecosystems

The shift in marine resource management from a compartmentalized approach of dealing with resources on a species basis to an approach based on management of spatially defined ecosystems requires an accurate accounting of energy flow. The flow of energy from primary production through the food web will ultimately limit upper trophic-level fishery yields. In this … Read more

Does the fall phytoplankton bloom control recruitment of Georges Bank haddock, Melanogrammus aeglefinus, through parental condition?

In 2003, the Georges Bank stock of haddock (Melanogrammus aeglefinus) experienced the largest recruitment event recorded during its assessed history. Several hypotheses have been advanced to explain recruitment variability in this much-scrutinized stock, including variability in the retention of eggs and larvae on Georges Bank, the timing of haddock spawning, and variability in the spring … Read more

Predicting euphotic-depth-integrated chlorophyll-a from discrete depth and satellite-observable chlorophyll-a off central California

Predicting water column integrated phytoplankton biomass from near-surface measurements has been an important effort in marine ecological research, particularly since the advent of satellite remote sensing of ocean color. Quantitative relationships between chlorophyll-aconcentrations (Chl-a) at the surface and its depth-integrated magnitude have thus far only been developed for open-ocean waters. Here we develop and test … Read more

Seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, examined by quantitative PCR

The presence of neurotoxic species within the genus Alexandrium along the U.S. coastline has raised concern of potential poisoning through the consumption of contaminated seafood. Paralytic shellfish toxins (PSTs) detected in shellfish provide evidence that these harmful events have increased in frequency and severity along the California coast during the past 25 years, but the … Read more

Detecting toxic diatom blooms from ocean color and a regional ocean model

An apparent link between upwelling-related physical signatures, macronutrients, and toxic diatom blooms in the various “hotspots” throughout California has motivated attempts to forecast harmful algal blooms (HABs) as a function of select environmental variables. Empirical models for predicting toxic Pseudo-nitzschia blooms in one such region, the Santa Barbara Channel (SBC), are tested in a nowcast … Read more