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Planktonic microbes in the Gulf of Maine area

In the Gulf of Maine area (GoMA), as elsewhere in the ocean, the organisms of greatest numerical abundance are microbes. Viruses in GoMA are largely cyanophages and bacteriophages, including podoviruses which lack tails. There is also evidence of Mimivirus and Chlorovirus in the metagenome. Bacteria in GoMA comprise the dominant SAR11 phylotype cluster, and other … Read more

Historical trends of hypoxia in Changjiang River estuary: Applications of chemical biomarkers and microfossils

Over the past two decades China has become the largest global consumer of fertilizers, which has enhanced river nutrient fluxes and caused eutrophication and hypoxia in the Yangtze (Changjiang) large river delta-front estuary (LDE). In this study, we utilized plant pigments, lignin-phenols, stable isotopes (?13C and ?15N) and foraminiferal microfossils in 210Pb dated cores to … Read more

Effects of Winds on stratification and circulation in a partially mixed estuary

Numerical experiments are conducted to investigate how axial winds affect stratification and circulation in the partially mixed estuary of Chesapeake Bay. In the absence of rotational effects, stratification in the estuary decreases following both down?estuary and up?estuary winds, but stratification experiences larger reduction and takes longer to recover under up?estuary winds. In the presence of … Read more

Wind-driven lateral circulation in a stratified estuary and its effects on the along-channel flow

In the stratified rotating estuary of Chesapeake Bay, the Ekman transport drives a counterclockwise lateral circulation under down?estuary winds and a clockwise lateral circulation under up?estuary winds (looking into estuary). The clockwise circulation is about twice as strong as the counterclockwise circulation. Analysis of the streamwise vorticity equation reveals a balance among three terms: titling … Read more

Investigation of 2006 Alexandrium fundyense bloom in the Gulf of Maine: In-situ observations and numerical modeling

In-situ observations and a coupled bio-physical model were used to study the germination, initiation, and development of the Gulf of Maine (GOM) Alexandrium fundyense bloom in 2006. Hydrographic measurements and comparisons with GOM climatology indicate that 2006 was a year with normal coastal water temperature, salinity, current and river runoff conditions. A. fundyense cyst abundance … Read more

Skill assessment for coupled biological/physical models of marine systems

Simulation models coupling physics to biological processes in the ocean are central to many current programs. Ocean physical models have approached a high level of sophistication; the physical relationships are canonical, and modern computational technology for fluid mechanics has advanced steadily for two generations or more. The complexity of biological processes in the ocean presents … Read more

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

Harmful algal blooms (HABs) cause significant economic and ecological damage worldwide. Despite considerable efforts, a comprehensive understanding of the factors that promote these blooms has been lacking, because the biochemical pathways that facilitate their dominance relative to other phytoplankton within specific environments have not been identified. Here, biogeochemical measurements showed that the harmful alga Aureococcus … Read more